rs29500838 SNP Detail

Summary

• ID
  rs29500838
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127675531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTGTTTTTT TCGAGACAAG GTTTCTCTGT TAGTCTTGGC
  TGTCCTGGAA CTCACTCTGT AGACCAGGCT GACCTCGAAC TCAGAGATCT GCCTGCCTCT
  K
  CCTCCCAAGT GCTGGGATTA AAGGCGTGCA CCACCACGCC TGGCAAATTC ATCATTTTTA
  ATAGTTGAGT AGTACTCCAT TGTGTAAATG TATCACATT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45319536	mCV22597300	ABI	CRAMUS_MOUSE	f	SNP	T	T	G
ss147542419	ENSMUSSNP6978848	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29500838					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127675531 () rs orientation: forward

Symbol	Name	Function Class
Bub1	BUB1, mitotic checkpoint serine/threonine kinase	1746 bp upstream
Cpgi12232	CpG island 12232	1535 bp distal
Rr397289	regulatory region 397289	1535 bp downstream
Rr564601	regulatory region 564601	1763 bp distal
Rr564602	regulatory region 564602	1256 bp distal
Rr564603	regulatory region 564603	620 bp distal
Tssr26147	transcription start site region 26147	1736 bp upstream