rs29499260 SNP Detail

Summary

• ID
  rs29499260
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:25404749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTTG ACAGAAGTGG TAGGGTATGC
  Y
  TGTCATCTCA ACACTTATGA AACTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39570910	mCV22798285	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss145380238	ENSMUSSNP1384858	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss325336551	CHEV_17_25322720	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29499260					SNP	C	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25404749 () rs orientation: forward

Symbol	Name	Function Class
4930568E02Rik	RIKEN cDNA 4930568E02 gene	1206 bp upstream
Rr370183	regulatory region 370183	1194 bp downstream
Rr523509	regulatory region 523509	716 bp distal
Tssr5037	transcription start site region 5037	1212 bp downstream
Tssr143142	transcription start site region 143142	1173 bp downstream
Tssr143143	transcription start site region 143143	1157 bp downstream
Tssr146818	transcription start site region 146818	1373 bp upstream
Tssr146819	transcription start site region 146819	1307 bp upstream
Uqcc4	ubiquinol-cytochrome c reductase complex assembly factor 4	mRNA-UTR