rs29499163 SNP Detail

Summary

• ID
  rs29499163
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165838978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAAGGAGG GAGTGCACTC
  TGAGGCCCGG GATCCTCTCT CTGGGCAGTG TGTGAAGAAA ATACTTGTTT GAAGTGATTA
  CTTACAACAT CTTATTTTCT TCTTGGGTGC TGGGATTGAG CCCCAAGGTA AGGCCTCATG
  CATGCTTGGC AAGTGTTTTG TAACTGAACT GAATCTCCAG CCCATTAAGG CCTTCATTAT
  Y
  TTTTTTTTTC CCTTATGATA TAGACCAGAG TAGCTTCCAA CTTGGTTCTG CAGGTCCTTC
  CCCTATTTTG TGTGTGTGGT CTAGCACTAA CGCCTTTTTT TTTTTAAAAT ATTTATTTAT
  TTATTTTATG TATGTGAGTA CACTGTAGCT GTCTTCACAC ACCAGAAGAA GGCTTCAGAT
  CCCATTACAG ATAGTTGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45320015	mCV23746331	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29499163					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165838978 () rs orientation: forward

Symbol	Name	Function Class
Ncoa3	nuclear receptor coactivator 3	Intron
Rr570101	regulatory region 570101	577 bp distal
Rr570102	regulatory region 570102	376 bp proximal
Tssr21752	transcription start site region 21752	330 bp upstream