rs29493652 SNP Detail

Summary

• ID
  rs29493652
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:99564893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATAA AACACTGCTA TTTGAGTTAA
  Y
  GTCTTGAGCT TCAGGGGAAA AATGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss39074549	mCV23729520	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss145068543	ENSMUSSNP7100786	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss324503039	CHEV_13_100198340	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29493652					SNP	C	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:99564893 () rs orientation: forward

Symbol	Name	Function Class
Map1b	microtubule-associated protein 1B	Intron
Tssr4149	transcription start site region 4149	1207 bp upstream
Tssr123695	transcription start site region 123695	1047 bp upstream
Tssr123696	transcription start site region 123696	1506 bp downstream
Tssr123697	transcription start site region 123697	1696 bp downstream
Tssr123698	transcription start site region 123698	1827 bp downstream
Tssr123699	transcription start site region 123699	1918 bp downstream
Tssr123700	transcription start site region 123700	1943 bp downstream