rs29493639 SNP Detail

Summary

• ID
  rs29493639
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:19526747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTAC ACATTTGGAG AATTACACTA
  Y
  GTTTCTTTCT TCATAAACCT GCAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39073546	mCV23260078	ABI	CRAMUS_MOUSE	f	SNP		C	C				C		T
ss52626617	NES15515221	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	T		C	T	C	T		C	T	C	T		C
ss148743628	ENSMUSSNP5699276	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T
ss324278105	CHEV_13_19434446	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29493639					SNP	C	C	C	C	C	T	C	C	T	C	T	T	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52626617	NES15515221	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:19526747 () rs orientation: forward

Symbol	Name	Function Class
Tcrg	T cell receptor gamma chain	within coordinates
Trgc4	T cell receptor gamma, constant 4	1981 bp upstream
Trgj4	T cell receptor gamma joining 4	365 bp downstream
Tssr118538	transcription start site region 118538	1999 bp downstream
Tssr118539	transcription start site region 118539	879 bp downstream
Tssr118540	transcription start site region 118540	806 bp downstream
Tssr118541	transcription start site region 118541	750 bp downstream
Tssr118542	transcription start site region 118542	672 bp downstream
Tssr118543	transcription start site region 118543	636 bp downstream
Tssr118544	transcription start site region 118544	616 bp downstream
Tssr118545	transcription start site region 118545	590 bp downstream
Tssr118546	transcription start site region 118546	508 bp downstream
Tssr118547	transcription start site region 118547	435 bp downstream
Tssr118548	transcription start site region 118548	416 bp downstream
Tssr118549	transcription start site region 118549	150 bp upstream
Tssr118550	transcription start site region 118550	865 bp upstream
Tssr118551	transcription start site region 118551	1623 bp upstream
Tssr121588	transcription start site region 121588	868 bp upstream
Tssr121589	transcription start site region 121589	681 bp downstream
Tssr121590	transcription start site region 121590	1747 bp downstream