rs29476912 SNP Detail

Summary

• ID
  rs29476912
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:100689171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AGGGCTAATA TCCAACATAT ACAAAGAACT CAAGAAGTTA GACTCCAGAG AACACCCGAT
  CAAAAAATGG GGAACAGAGC TAAACAGAGA ATTCTCAACT GGGGAAACTT GACTGGCCAA
  GAAGCACCTA AAGAAGTGTT CAATATAGTC ATCAGGGAAA TGCAAATGAA AACAACCCTG
  AGATTCCACC TCACACCAGT CAGAATGATT GAGATCAAAA ACTCAGGTGA CAGCAAATGC
  TGGCAAGGAA GTGGAGAAAG AGGAACACTC CTCCATTGTT GGTGGGATTG CAAGCTGGTA
  Y
  AACCACTCTG GAAATCAGTC TGACGGTTCC TCAGAAAATT GGAGATAGTA CTACCTGAGG
  ACCCAGCTAT ACCACTCCTA GGCATATACC CAGAAGATGC TCCAACATGT AAAAAGGACA
  CATGCTCCAC TATGTTCATA GCAGCCATTA TAATAGCCAG AATCTGGAAA CAACCCAGAT
  GTCCCTTAAC AGAGGAATGG ATACAGAAAA TGTGGTACAT TTGCACAATG GAGTACTTAC
  TACTCAGCTA TTAAAAAGAA TGACTTCATG AAATTCACAG GCAAATGGAT GGAGCTAGAA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38848923	mCV23305481	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29476912					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:100689171 () rs orientation: forward

Symbol	Name	Function Class
Cachd1	cache domain containing 1	Intron
Rr596037	regulatory region 596037	1734 bp proximal