rs29476797 SNP Detail

Summary

• ID
  rs29476797
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:7164674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTT GGGAGAATCT TTTTAGCGGA
  Y
  GCATCTGCGT TAAAATAACT ACTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss38850718	mCV23013338	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss131649938	ENSMUSSNP6452605	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs29476797					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:7164674 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2571	CpG island 2571	162 bp distal
Igfbp3	insulin-like growth factor binding protein 3	mRNA-UTR
Rr442460	regulatory region 442460	1483 bp distal
Rr442461	regulatory region 442461	261 bp distal
Rr442462	regulatory region 442462	250 bp proximal
Rr442463	regulatory region 442463	1067 bp proximal
Tssr106776	transcription start site region 106776	1253 bp upstream
Tssr106777	transcription start site region 106777	1220 bp upstream
Tssr106778	transcription start site region 106778	1059 bp upstream
Tssr106779	transcription start site region 106779	851 bp upstream
Tssr106780	transcription start site region 106780	815 bp upstream
Tssr106781	transcription start site region 106781	745 bp upstream
Tssr106782	transcription start site region 106782	684 bp upstream
Tssr106783	transcription start site region 106783	495 bp upstream