rs29476259 SNP Detail

Summary

• ID
  rs29476259
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:100689149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTACTAATCC TACATCCGAT AGAGGGCTAA TATCCAACAT ATACAAAGAA CTCAAGAAGT
  TAGACTCCAG AGAACACCCG ATCAAAAAAT GGGGAACAGA GCTAAACAGA GAATTCTCAA
  CTGGGGAAAC TTGACTGGCC AAGAAGCACC TAAAGAAGTG TTCAATATAG TCATCAGGGA
  AATGCAAATG AAAACAACCC TGAGATTCCA CCTCACACCA GTCAGAATGA TTGAGATCAA
  AAACTCAGGT GACAGCAAAT GCTGGCAAGG AAGTGGAGAA AGAGGAACAC TCCTCCATTG
  Y
  TGGTGGGATT GCAAGCTGGT ACAACCACTC TGGAAATCAG TCTGACGGTT CCTCAGAAAA
  TTGGAGATAG TACTACCTGA GGACCCAGCT ATACCACTCC TAGGCATATA CCCAGAAGAT
  GCTCCAACAT GTAAAAAGGA CACATGCTCC ACTATGTTCA TAGCAGCCAT TATAATAGCC
  AGAATCTGGA AACAACCCAG ATGTCCCTTA ACAGAGGAAT GGATACAGAA AATGTGGTAC
  ATTTGCACAA TGGAGTACTT ACTACTCAGC TATTAAAAAG AATGACTTCA TGAAATTCAC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38850289	mCV23305480	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29476259					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:100689149 () rs orientation: forward

Symbol	Name	Function Class
Cachd1	cache domain containing 1	Intron
Rr596037	regulatory region 596037	1756 bp proximal