rs29473548 SNP Detail

Summary

• ID
  rs29473548
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:60089635 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GGTGG TGGTGATGGT GGTAGTTGCT
  Y
  GGGGAAGGGG CATCACTTTG GCCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38845594	mCV23675944	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29473548					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:60089635 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi2979	CpG island 2979			1014 bp proximal
Mir6921	microRNA 6921			1729 bp downstream
Rai1	retinoic acid induced 1			mRNA-UTR
				Noncoding-Transcript-Variant
Rr448348	regulatory region 448348			1834 bp distal
Rr448349	regulatory region 448349			282 bp distal
Rr448350	regulatory region 448350			1014 bp proximal
Rr448351	regulatory region 448351			1251 bp proximal
Srebf1	sterol regulatory element binding transcription factor 1			280 bp downstream
Tssr108277	transcription start site region 108277			610 bp downstream