rs29469944 SNP Detail

Summary

• ID
  rs29469944
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:95722961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTC AGACCAATAA AGGAGGTGAA
  R
  GGGGACAAAG GGACTTGTTC TCTTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss38842258	mCV23213489	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs29469944					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:95722961 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abi3	ABI family member 3			mRNA-UTR
				Noncoding-Transcript-Variant
Phospho1	phosphatase, orphan 1			mRNA-UTR
Rr369341	regulatory region 369341			1053 bp upstream
Rr455202	regulatory region 455202			1433 bp distal
Rr455203	regulatory region 455203			222 bp distal
Tssr3654	transcription start site region 3654			1591 bp downstream
Tssr104394	transcription start site region 104394			1367 bp downstream
Tssr104395	transcription start site region 104395			798 bp downstream
Tssr104396	transcription start site region 104396			762 bp downstream
Tssr104397	transcription start site region 104397			597 bp downstream
Tssr110283	transcription start site region 110283			312 bp upstream
Tssr110284	transcription start site region 110284			1981 bp downstream
Tssr110285	transcription start site region 110285			2000 bp downstream