rs29460300 SNP Detail

Summary

• ID
  rs29460300
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:67576235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAG ATAGACTTGG CTCTCCCTCT
  Y
  GGATACTCTG CCCATTGAGT TCTCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38829079	mCV24738329	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss132331030	ENSMUSSNP562793	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss323721086	CHEV_11_67498911	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29460300					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:67576235 () rs orientation: forward

Symbol	Name	Function Class
Gas7	growth arrest specific 7	mRNA-UTR
Glp2r	glucagon-like peptide 2 receptor	Intron
Tssr102274	transcription start site region 102274	1878 bp downstream
Tssr102275	transcription start site region 102275	1500 bp downstream
Tssr102276	transcription start site region 102276	1186 bp downstream
Tssr102277	transcription start site region 102277	774 bp downstream
Tssr102278	transcription start site region 102278	722 bp downstream
Tssr102279	transcription start site region 102279	345 bp downstream
Tssr102280	transcription start site region 102280	1235 bp upstream
Tssr102281	transcription start site region 102281	1723 bp upstream