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rs29459315 SNP Detail
Summary
  • ID
    rs29459315
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr11:60091114 (GRCm39)
  • SNP Orientation to the Genome
    reverse
  • SNP Reference Flanking Sequence
                                          CAGTC ATAGGAAAGA AGCTGAGCCC
    M
    CCTGTGTGCC CAGCCCAAGT GGAGA                                      
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
C57BL/6J
DBA/2J
ss38828608 mCV23675934 ABI CRAMUS_MOUSE f SNP C A C C
ss132249175 ENSMUSSNP935004 ENSEMBL ENSEMBL_Sanger r SNP T G
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
C57BL/6J
DBA/2J
rs29459315 SNP C A C C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:60091114 () rs orientation: reverse
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi2979 CpG island 2979 113 bp distal
Mir6921 microRNA 6921 250 bp downstream
Mir6922 microRNA 6922 1974 bp downstream
Rai1 retinoic acid induced 1 1091 bp downstream
Rr448349 regulatory region 448349 1761 bp distal
Rr448350 regulatory region 448350 444 bp distal
Rr448351 regulatory region 448351 207 bp distal
Srebf1 sterol regulatory element binding transcription factor 1 Intron
Noncoding-Transcript-Variant
Tssr108277 transcription start site region 108277 835 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory