rs29459315 SNP Detail

Summary

• ID
  rs29459315
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:60091114 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CAGTC ATAGGAAAGA AGCTGAGCCC
  M
  CCTGTGTGCC CAGCCCAAGT GGAGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38828608	mCV23675934	ABI	CRAMUS_MOUSE	f	SNP	C	A	C	C
ss132249175	ENSMUSSNP935004	ENSEMBL	ENSEMBL_Sanger	r	SNP		T		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29459315					SNP	C	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:60091114 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi2979	CpG island 2979			113 bp distal
Mir6921	microRNA 6921			250 bp downstream
Mir6922	microRNA 6922			1974 bp downstream
Rai1	retinoic acid induced 1			1091 bp downstream
Rr448349	regulatory region 448349			1761 bp distal
Rr448350	regulatory region 448350			444 bp distal
Rr448351	regulatory region 448351			207 bp distal
Srebf1	sterol regulatory element binding transcription factor 1			Intron
				Noncoding-Transcript-Variant
Tssr108277	transcription start site region 108277			835 bp upstream