rs29453311 SNP Detail

Summary

• ID
  rs29453311
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:28804146 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTGCAGGTA TCTTTCGCTG AGCTGGGTGG AACTTCAGGT
  ACAGCTGAGC CGTGGGTGGG TACTCTACAG TTTCAGAAAA TAGACAGATG CTGCGCCCCC
  R
  TTTCCACCTC CAAGGGGGAA GAGGGATGGA ATCGATCATA TTCTATATCC CCTTTTGACT
  ACCGTTTTCT GGAGCTTTAT GAGTAGGTGT GGTATAAAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38822191	mCV24782434	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	A
ss131883396	ENSMUSSNP4523013	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29453311					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:28804146 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Efemp1	epidermal growth factor-containing fibulin-like extracellular matrix protein 1			Intron
				Noncoding-Transcript-Variant
Gm34185	predicted gene, 34185			1638 bp upstream
Rr444133	regulatory region 444133			932 bp distal
Rr444134	regulatory region 444134			221 bp distal
Tssr3451	transcription start site region 3451			373 bp downstream
Tssr3452	transcription start site region 3452			348 bp downstream
Tssr100686	transcription start site region 100686			887 bp downstream
Tssr100687	transcription start site region 100687			154 bp upstream