rs29439153 SNP Detail

Summary

• ID
  rs29439153
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:46706928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACCACAGAA ATGAATGAGG GATTATAGCT
  GATAAAGGAA GAGTCAGACT GAAGATGGAA GGTACTATTC ATCTGAGGGC TTTCCCTTAC
  TTTGCAGAAA TTTGGCTCAG TGTTTTTGGG CCTCTCAATT TTTATGGAAA CCATACTGAT
  M
  tctctctctc tctctctctc tctctctctc tctctctctc tctctctctc tctccctctc
  tctctccctc tctctctctc tctctccctc tctctccctc tctctccctc tctctccctc
  tctttccctt tctctccctc tctctccctc                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38799384	mCV25344012	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	A
ss323660820	CHEV_11_46629603	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29439153					SNP	C	C	A	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:46706928 () rs orientation: forward

Symbol	Name	Function Class
Rr386019	regulatory region 386019	1106 bp downstream
Timd4	T cell immunoglobulin and mucin domain containing 4	Intron
Tssr101129	transcription start site region 101129	559 bp downstream
Tssr101130	transcription start site region 101130	392 bp downstream
Tssr101131	transcription start site region 101131	363 bp downstream
Tssr101132	transcription start site region 101132	1436 bp upstream
Tssr101133	transcription start site region 101133	1471 bp upstream