rs29423619 SNP Detail

Summary

• ID
  rs29423619
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69825061 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAGGAAGCG GTCATTTCTG CGCACCTACT GCCTCCCTGG
  AGACTTGGTT CTTTTCTTGT CTCTTCTCTT TTTGTATTCA CTCTGCCTGA TGCCCTAAAA
  W
  TTCCAATCCT CAGCTCTTAA AGGACCAGAG GGGTGCGGTG GGCAAGTTTG CTGTTGAAAT
  TATGACTAGG TGGACCCCAG GAGAGGCCAG CAGAGGGCG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38759448	mCV23933764	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	T
ss132363161	ENSMUSSNP443728	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		T
ss323732258	CHEV_11_69747737	CHEVERUD	SCREENING_POP	f	SNP					A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29423619					SNP	A	A	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69825061 () rs orientation: forward

Symbol	Name	Function Class
Gm72757	predicted gene, 72757	1824 bp downstream
Rr450159	regulatory region 450159	1770 bp distal
Rr450160	regulatory region 450160	779 bp distal
Rr450161	regulatory region 450161	424 bp distal
Rr450162	regulatory region 450162	within coordinates
Rr450163	regulatory region 450163	83 bp proximal
Rr450164	regulatory region 450164	1071 bp proximal
Rr450165	regulatory region 450165	1305 bp proximal
Tssr102563	transcription start site region 102563	1460 bp upstream
Tssr102564	transcription start site region 102564	1562 bp upstream
Tssr102565	transcription start site region 102565	1583 bp upstream
Tssr102566	transcription start site region 102566	1610 bp upstream
Tssr102567	transcription start site region 102567	1630 bp upstream
Tssr102568	transcription start site region 102568	1659 bp upstream
Tssr102569	transcription start site region 102569	1700 bp upstream
Tssr102570	transcription start site region 102570	1754 bp upstream
Tssr108891	transcription start site region 108891	1521 bp downstream
Tssr108892	transcription start site region 108892	1913 bp downstream
Tssr108893	transcription start site region 108893	1937 bp downstream
Tssr108894	transcription start site region 108894	1998 bp downstream
Ybx2	Y box protein 2	1591 bp upstream