rs29422979 SNP Detail

Summary

• ID
  rs29422979
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:115822581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGGT CCTTACCAAT ACTTAAATAA
  R
  GGTAGTAAAA GCAAAACAAA CAAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38759630	mCV22636735	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A	G
ss132881380	ENSMUSSNP1199449	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		G
ss323864426	CHEV_11_115793069	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29422979					SNP	G	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115822581 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Recql5	RecQ protein-like 5			Intron
				Noncoding-Transcript-Variant
Rr403130	regulatory region 403130			1575 bp downstream
Rr460090	regulatory region 460090			1497 bp distal
Rr460092	regulatory region 460092			1304 bp proximal
Rr460093	regulatory region 460093			1538 bp proximal
Rr460094	regulatory region 460094			1712 bp proximal
Sap30bp	SAP30 binding protein			1896 bp upstream
Tssr105922	transcription start site region 105922			1874 bp upstream
Tssr111808	transcription start site region 111808			1709 bp downstream