rs29409679 SNP Detail

Summary

• ID
  rs29409679
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:62739367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGC AAAAGAAAGC AGAGGAGAGG
  Y
  CTGAGACCTG CAATTAGGAG AGGTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38724598	mCV23975318	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss132288623	ENSMUSSNP2583861	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss323704657	CHEV_11_62662043	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29409679					SNP	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:62739367 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fbxw10	F-box and WD-40 domain protein 10			Intron
				Noncoding-Transcript-Variant
Rr386163	regulatory region 386163			1480 bp downstream
Rr448938	regulatory region 448938			1399 bp distal
Tssr102067	transcription start site region 102067			1454 bp downstream
Tssr102068	transcription start site region 102068			1438 bp downstream
Tssr102069	transcription start site region 102069			1409 bp downstream