rs29394546 SNP Detail

Summary

• ID
  rs29394546
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:118288064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCATT GCAACTTTAC ATTAAAACTT
  R
  AGGGTTCCCA GTCCCAAGGG GACAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38686615	mCV24190018	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G	A
ss132901263	ENSMUSSNP6473325	ENSEMBL	ENSEMBL_Sanger	f	SNP			A		A
ss323870250	CHEV_11_118258552	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29394546					SNP	A	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:118288064 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lgals3bp	lectin, galactoside-binding, soluble, 3 binding protein			Intron
				Noncoding-Transcript-Variant
Tssr112160	transcription start site region 112160			497 bp upstream
Tssr112161	transcription start site region 112161			469 bp upstream
Tssr112162	transcription start site region 112162			400 bp upstream
Tssr112163	transcription start site region 112163			1173 bp downstream
Tssr112164	transcription start site region 112164			1291 bp downstream