rs29362335 SNP Detail

Summary

• ID
  rs29362335
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:8637729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGCCGGAT GCTGTCTAGC
  TCTAAGTCCC TCGCACAGAG TCAGCACAGC CCACGGAGCA GCTCCAGCTC ACACTTACTC
  ATTCTTTCAT AGTCTCAAAA TCATGGTTAG TATTCTCCAA AAGTTACATA CGGCAGCTGG
  GTGACAACGC TCAGGGGTGG AAGGCAGGTT AGTAGCTAGA AGGAGAAATG CAGCTCTAGA
  R
  AAATCGAAGA AGCCAAGAAA GTTGCTTCCT AAGCAGAAGT GAACAGAAAG CCTTTTTCTT
  GGAGCAACAG AAAAGTTTTG CTTGCACACA AAAACAAACA AACAAACAAA AAAACATTCA
  TCAACTTACC GGCTTCGGCA TTTAGCAGGC GTAAGGGGTA GTTTTTTGCC CCTTCCCCCT
  CCCCACGCAG AGCAAACCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
ss38614763	mCV23360806	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss146766621	ENSMUSSNP6893057	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
ss323245272	CHEV_10_8481763	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
rs29362335					SNP	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8637729 () rs orientation: forward

Symbol	Name	Function Class
Rr384117	regulatory region 384117	within coordinates
Rr427375	regulatory region 427375	515 bp distal
Rr427376	regulatory region 427376	69 bp proximal
Rr427377	regulatory region 427377	1539 bp proximal
Sash1	SAM and SH3 domain containing 1	Intron
Tssr3133	transcription start site region 3133	420 bp downstream
Tssr96639	transcription start site region 96639	1339 bp upstream
Tssr96640	transcription start site region 96640	254 bp downstream
Tssr96641	transcription start site region 96641	304 bp downstream
Tssr96642	transcription start site region 96642	323 bp downstream
Tssr96643	transcription start site region 96643	384 bp downstream
Tssr96644	transcription start site region 96644	486 bp downstream
Tssr96645	transcription start site region 96645	614 bp downstream