rs29342194 SNP Detail

Summary

• ID
  rs29342194
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:8637722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAAGCAAT GCCGGATGCT
  GTCTAGCTCT AAGTCCCTCG CACAGAGTCA GCACAGCCCA CGGAGCAGCT CCAGCTCACA
  CTTACTCATT CTTTCATAGT CTCAAAATCA TGGTTAGTAT TCTCCAAAAG TTACATACGG
  CAGCTGGGTG ACAACGCTCA GGGGTGGAAG GCAGGTTAGT AGCTAGAAGG AGAAATGCAG
  M
  TCTAGAAAAA TCGAAGAAGC CAAGAAAGTT GCTTCCTAAG CAGAAGTGAA CAGAAAGCCT
  TTTTCTTGGA GCAACAGAAA AGTTTTGCTT GCACACAAAA ACAAACAAAC AAACAAAAAA
  ACATTCATCA ACTTACCGGC TTCGGCATTT AGCAGGCGTA AGGGGTAGTT TTTTGCCCCT
  TCCCCCTCCC CACGCAGAGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
ss38573482	mCV23360807	ABI	CRAMUS_MOUSE	f	SNP	A	A	C
ss146766617	ENSMUSSNP3973239	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C
ss323245271	CHEV_10_8481756	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
rs29342194					SNP	A	A	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8637722 () rs orientation: forward

Symbol	Name	Function Class
Rr384117	regulatory region 384117	within coordinates
Rr427375	regulatory region 427375	508 bp distal
Rr427376	regulatory region 427376	76 bp proximal
Rr427377	regulatory region 427377	1546 bp proximal
Sash1	SAM and SH3 domain containing 1	Intron
Tssr3133	transcription start site region 3133	427 bp downstream
Tssr96639	transcription start site region 96639	1332 bp upstream
Tssr96640	transcription start site region 96640	261 bp downstream
Tssr96641	transcription start site region 96641	311 bp downstream
Tssr96642	transcription start site region 96642	330 bp downstream
Tssr96643	transcription start site region 96643	391 bp downstream
Tssr96644	transcription start site region 96644	493 bp downstream
Tssr96645	transcription start site region 96645	621 bp downstream