rs29335850 SNP Detail

Summary

• ID
  rs29335850
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:8637659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTGTAGATT TATTTAAAGC AATGCCGGAT
  GCTGTCTAGC TCTAAGTCCC TCGCACAGAG TCAGCACAGC CCACGGAGCA GCTCCAGCTC
  ACACTTACTC ATTCTTTCAT AGTCTCAAAA TCATGGTTAG TATTCTCCAA AAGTTACATA
  Y
  GGCAGCTGGG TGACAACGCT CAGGGGTGGA AGGCAGGTTA GTAGCTAGAA GGAGAAATGC
  AGCTCTAGAA AAATCGAAGA AGCCAAGAAA GTTGCTTCCT AAGCAGAAGT GAACAGAAAG
  CCTTTTTCTT GGAGCAACAG AAAAGTTTTG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38560502	mCV23360814	ABI	CRAMUS_MOUSE	f	SNP	T	T						C
ss50810556	NES14204851	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	C	C	C		T	C	C		C
ss146766616	ENSMUSSNP2240587	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						C
ss323245270	CHEV_10_8481693	CHEVERUD	SCREENING_POP	f	SNP											T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29335850					SNP	T	T	T	T	T	C	T	C	C	C	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50810556	NES14204851	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8637659 () rs orientation: forward

Symbol	Name	Function Class
Rr384117	regulatory region 384117	within coordinates
Rr427375	regulatory region 427375	445 bp distal
Rr427376	regulatory region 427376	139 bp proximal
Rr427377	regulatory region 427377	1609 bp proximal
Sash1	SAM and SH3 domain containing 1	Intron
Tssr3133	transcription start site region 3133	490 bp downstream
Tssr96639	transcription start site region 96639	1269 bp upstream
Tssr96640	transcription start site region 96640	324 bp downstream
Tssr96641	transcription start site region 96641	374 bp downstream
Tssr96642	transcription start site region 96642	393 bp downstream
Tssr96643	transcription start site region 96643	454 bp downstream
Tssr96644	transcription start site region 96644	556 bp downstream
Tssr96645	transcription start site region 96645	684 bp downstream