rs29319056 SNP Detail

Summary

• ID
  rs29319056
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:128127241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTTGGGAG CTTCTAACTT
  GTATCAGGGC CTGATGTTTC TCTCTGTGTC CTCTAGAATT AAGCAACCCG AGTACTGAAT
  ACATCACAAC CAACGAAAAC CCAATGTTGG CTGGCGAGAG CAGTGGAGAT GAGACTTCCA
  TACCCTACCA CAGCCATTTT GATGCGGATG GACTCTTGGG ATGGACTCTT GATACCTTCT
  R
  AGGACTAGGA GCTATGTTTC TGTTTTGTTC CTCCTAACTC CAACATCAAG ATGTTGCTTC
  CGACAGTGGG GATCGGGGTC TTCTAAGCTG GTTTACATGA ACTTTGGAAT AAGAGGTAAA
  AGCCTAACAT GGTTTTGAAG GTGCACCAAA GAGTCAGAAC AGACACTGGC CATAATCTTT
  CTAGGATCCT GAGGCTACCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38525227	mCV23898442	ABI	CRAMUS_MOUSE	f	SNP	A	A	A					G		G
ss50948061	NES14141702	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	A	G	A		G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29319056					SNP	A	A	A	G	A	G	A	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50948061	NES14141702	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128127241 () rs orientation: forward

Symbol	Name	Function Class
Stat2	signal transducer and activator of transcription 2	Coding
Tssr96388	transcription start site region 96388	1119 bp upstream