rs29296627 SNP Detail

Summary

• ID
  rs29296627
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:149441495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCTCATG TTCTTCTTTT
  ACTGATGCTC TGAACAAGGA CTTAGGCTTT CTCTTGTGAT GTAGCACACT ACTCGCCAGT
  GCAAGAAACA ATTTGTAGCA TTCACTTTTT TTCATTCAAT TATGTCAAAC TGAGTAGAGA
  CCATTATGTC AGAAAAAAAA GGCAGTCAAA GCTAAAATGA GACATTATAA AAAAGAATGA
  Y
  ATTATACACT GGGCGTTGAA TCCCAGCACT TGGGAGGCAG AAACAGGCAG ATCTTATGAG
  TTCAGGGGCC GGCCAGGGCT ACATAGTGAG GTCCTGTATC AAGAAAACCA AGGGATACTT
  TTGGGATAGC ATTGGAAATG TAAATGAGGA AAATACCTAA TTAAAAATAA AAAAGAAAAC
  CAAACAACAA AAGAATTATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38491279	NES09737634	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29296627					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38491279	NES09737634	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:149441495 () rs orientation: forward

Symbol	Name	Function Class
Rr694336	regulatory region 694336	476 bp distal
Tro	trophinin	916 bp upstream
Tssr164372	transcription start site region 164372	1366 bp upstream
Tssr164373	transcription start site region 164373	1122 bp upstream
Tssr164374	transcription start site region 164374	1092 bp upstream