rs29295963 SNP Detail

Summary

• ID
  rs29295963
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:149839314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACTTTATG TTGTGTGTTG
  TAGATTTATG TCATTTGGCT CAGTCTTAGT CCTGGAAGTT TCTAGCTGCT TCTCTATGTT
  TATCTGTTTC TGTGTCTGTC ATTATGTCCC CCATAAGTCA GTGTTCTAAT AGTGGTGGCT
  GGGGTGCCTT TTGATATTTC CTGCCAGATC TTCCTATTCT GGAACTTTCT TACAAAGCCA
  S
  CACACTGTTC TTTAGTCACA TGCTTCATCT ACACACCTTC TCAGGTATCC ATAATTTTGT
  CCACCTTTCT TCCCTCATCT GTAGGACCAT CCTGACCACC TATGTTTGAA ATAAAAACAC
  ACTCTACTCT GGACAGCTCA ACTTAAAATC ACATCCTTCA GAAAGTTGCC TCATCCCTCC
  TTCCAAATAT GATTTCTTTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38490675	NES09753160	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29295963					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38490675	NES09753160	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:149839314 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
DXMit153	DNA segment, Chr X, Massachusetts Institute of Technology 153			317 bp distal
Fgd1	FYVE, RhoGEF and PH domain containing 1			Intron
				Noncoding-Transcript-Variant
Rr694364	regulatory region 694364			1402 bp distal
Rr694365	regulatory region 694365			408 bp distal