rs29250521 SNP Detail

Summary

• ID
  rs29250521
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:54624170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTAGCAGT TGAAAATATA
  GACAGGGCTG GTGAGATGGC TCAGGGGTTA AGAGCACCGA CTGCTCTTCC AAAGGTCCTG
  AGTTCAAATC CCAGCAACCA CATGGTGGCT CACAACCATC TGTAATGAGA TCTGACGCCC
  TCTTCTGGTG TGTCTAAGAC AGCTACAGTA TACTTACATA TGATAAATAA ATAAATATTT
  W
  TTAAAAAAAG AAAATATAGA CAGGCCTTCA CACAATGTGA AGAACATTTG GATGTTATGA
  GCCACTTCAA GGCAGTGGGG TGGGGGTGGG GAAGGGGGAC GGTCATCAGT GTCATCATCT
  GGAGGACTTT CACCTTGGGC AGTGCAACCT GCTAGTTTAG ACATTTTTCC AGTGACTTTT
  TTACAATGTG CACACTGATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss39067701	mCV25044089	ABI	CRAMUS_MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs29250521					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:54624170 () rs orientation: forward

Symbol	Name	Function Class
Rr403785	regulatory region 403785	176 bp downstream
Rr480227	regulatory region 480227	766 bp distal
Rr480228	regulatory region 480228	236 bp distal
Rr480229	regulatory region 480229	48 bp distal