rs29250117 SNP Detail

Summary

• ID
  rs29250117
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:54624225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCGACTGCT CTTCCAAAGG
  TCCTGAGTTC AAATCCCAGC AACCACATGG TGGCTCACAA CCATCTGTAA TGAGATCTGA
  CGCCCTCTTC TGGTGTGTCT AAGACAGCTA CAGTATACTT ACATATGATA AATAAATAAA
  TATTTTTTAA AAAAAGAAAA TATAGACAGG CCTTCACACA ATGTGAAGAA CATTTGGATG
  K
  TATGAGCCAC TTCAAGGCAG TGGGGTGGGG GTGGGGAAGG GGGACGGTCA TCAGTGTCAT
  CATCTGGAGG ACTTTCACCT TGGGCAGTGC AACCTGCTAG TTTAGACATT TTTCCAGTGA
  CTTTTTTACA ATGTGCACAC TGATTTTGGG CTAGAAGGGG TCTGAGTGGT CTTGGTCTTT
  GATCACTTCT GGAGGCTTCG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss39070633	mCV25044274	ABI	CRAMUS_MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs29250117					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:54624225 () rs orientation: forward

Symbol	Name	Function Class
D13Mit54	DNA segment, Chr 13, Massachusetts Institute of Technology 54	1772 bp proximal
Rr403785	regulatory region 403785	231 bp downstream
Rr480227	regulatory region 480227	821 bp distal
Rr480228	regulatory region 480228	291 bp distal
Rr480229	regulatory region 480229	103 bp distal