rs29237766 SNP Detail

Summary

• ID
  rs29237766
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:77196099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTT GAACTAAGAT TAATAAAATA
  Y
  AAGACATAAT TTGACACTAA GGAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss39055642	mCV24822615	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss144698367	ENSMUSSNP1192486	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss324446878	CHEV_13_77187241	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs29237766					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:77196099 () rs orientation: forward

Symbol	Name	Function Class
Rr482874	regulatory region 482874	374 bp proximal
Slf1	SMC5-SMC6 complex localization factor 1	Intron
Tssr123272	transcription start site region 123272	562 bp upstream
Tssr123273	transcription start site region 123273	305 bp upstream