rs29231580 SNP Detail

Summary

• ID
  rs29231580
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:56488445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATTGTCCG TAGTACAGAA
  ATGGATCCAT TCGCTGGGCT GACTTCTCAG AAGGGAGACC AAACTCCCAA TGAAGTTCTG
  GAAAATTTCT ATCACACAAG TCTGCAGGAA TCAGCCCGCG TATCAGTGAC AGCCTGACAG
  CCTGGAAAGT CACCAGAGCC ACCGCAATAG CCCAGCCTGC AGAGCAGATG GAGCCTGAAG
  Y
  GCTCACCCTA GAACCATCGT CCAAAGCAAC TGCGCACACA GTAGCCAAGA CTTCAGATGT
  TGGGCTCTGC TCCAGTTTTC AACGCCTGTT ACCCTGGAGG TTGAGCAACA CCATGCCCAT
  AAACAGAGAA ACATGTGTGC TGTGACTTGC CAATCCGGGC CGTGTGGGAG CGCTCCTTCT
  GAAGTGTGGT CCACTTCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39048102	mCV22866690	ABI	CRAMUS_MOUSE	f	SNP		C	T					C		C
ss61809904	NES17750350	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	C	T		C	C	C	C	C	C	C	C	C
ss149043896	ENSMUSSNP1007506	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29231580					SNP	C	C	T	C	T	C	T	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61809904	NES17750350	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:56488445 () rs orientation: forward

Symbol	Name	Function Class
4933404M09Rik	RIKEN cDNA 4933404M09 gene	656 bp upstream
Gm24716	predicted gene, 24716	1793 bp downstream
Rr480710	regulatory region 480710	within coordinates
Rr480711	regulatory region 480711	1895 bp proximal