rs29229513 SNP Detail

Summary

• ID
  rs29229513
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:19527466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTCA GAGAATCTTC AAGTTAAAAG
  K
  AAATTTTCCA AGCAAGGAAT AGCTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39047801	mCV23260061	ABI	CRAMUS_MOUSE	f	SNP		T	T				T		G
ss52626609	NES15515235	PERLEGEN	MM_PANEL2	f	SNP	T		T	G	T	G		G	G	T	G		G	G	T	G		T
ss148743647	ENSMUSSNP4825524	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						G
ss324278109	CHEV_13_19435165	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29229513					SNP	T	T	T	G	T	G	T	G	G	T	G	G	G	G	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52626609	NES15515235	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:19527466 () rs orientation: forward

Symbol	Name	Function Class
Tcrg	T cell receptor gamma chain	within coordinates
Trgc4	T cell receptor gamma, constant 4	1262 bp upstream
Trgj4	T cell receptor gamma joining 4	1084 bp downstream
Tssr118539	transcription start site region 118539	1598 bp downstream
Tssr118540	transcription start site region 118540	1525 bp downstream
Tssr118541	transcription start site region 118541	1469 bp downstream
Tssr118542	transcription start site region 118542	1391 bp downstream
Tssr118543	transcription start site region 118543	1355 bp downstream
Tssr118544	transcription start site region 118544	1335 bp downstream
Tssr118545	transcription start site region 118545	1309 bp downstream
Tssr118546	transcription start site region 118546	1227 bp downstream
Tssr118547	transcription start site region 118547	1154 bp downstream
Tssr118548	transcription start site region 118548	1135 bp downstream
Tssr118549	transcription start site region 118549	557 bp downstream
Tssr118550	transcription start site region 118550	146 bp upstream
Tssr118551	transcription start site region 118551	904 bp upstream
Tssr121588	transcription start site region 121588	1587 bp upstream
Tssr121589	transcription start site region 121589	30 bp upstream
Tssr121590	transcription start site region 121590	1028 bp downstream
Tssr121591	transcription start site region 121591	1893 bp downstream