rs29213201 SNP Detail

Summary

• ID
  rs29213201
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:31612892 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGACCATC CCGCGGTCAG
  GTCTATATAT CATTCATTCA AGAGTTTATT AAGAATTCAT TTGTGCTCCC TTATCACACC
  AAGGACTAGG ACCATGGCTG TCCACAGCCT GAGATCTGCA AACTGTGTGC CCACAATTGC
  CCACTTGGAC TTTTGCGATG GGAGATAACA GCAATGGCAT CCAAATGGAG AGCTATTGCA
  H
  CTTGGTATTC TCACCCAGAA TATGCAAGAT ATTGGTGGCA TTACCATCCT GCACTGGTTT
  GGATGTGAAG CCATCAGAGG CCTTTCTGTA GAAAGTCCAG GGATTCTTAT TTCACTTTCC
  CATGACTCTC CCCTCATCCA GCTCTTGGCT GGAGCTCTTG TGTTTATGAG GTTGAGTGTT
  CTTCAACCTT CCAAGCTCAG                                            
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss39030998	mCV24464045	ABI	CRAMUS_MOUSE	f	SNP	T	C					C
ss50966263	NES14423313	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C	C		C	C	C	C	A	C	C	C
ss137568609	ENSMUSSNP2477180	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29213201					SNP	T	C	C	C	C	C	C	C	C	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50966263	NES14423313	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:31612892 () rs orientation: forward

Symbol	Name	Function Class
Gm48524	predicted gene, 48524	within coordinates