rs29206580 SNP Detail

Summary

• ID
  rs29206580
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:98884644 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AGTGAATGAG TAATTGCCTG TGAAATTCAG AGCTAAGAAA GCAAATTTAC AATCAAAGGG
  GATGGTTATT AATTGTATTT TCAGTTTTTA AAAAAGCCTT TCTAAAATAA CAGGTGTTGA
  CTTCATTGGA GGGCTGCAGG AGGAAAATGG ATCTTGGCAG ATGGTCAGCA ATTTGCTGCT
  AATGTAATAC AGCTCCTCTG TAGAAATTGA GACTTTTAGT TTCGGGGAAG TTTTGTAGGA
  CTTCTACATT TGGAGTTTGC TACAGTTGAA GAAGAGCTTT AAGAGACTGT ATATTCCCCC
  M
  AAAAAAATCA TTTTTGGAAT TCCAGTAATA TTGGCAGGAA ATTACTGAAA TCCAAATAAA
  TAAGGCATAT GGTTAATAAT GTATCAGTGT TAGCTCCTTG GATGTGACAA GCATACTGTG
  GCAATGTGGG AAGCTGGGTG AGGAATACAT TGAACTCAGT ACTATCTGTG CATTGTTTTA
  AAATGGAAAC ATCAAATTTT TCTGCAATTA AAAAATGTGT ATAGGGCCAG AGAGAAGAAG
  CCAATGCTGT TAGGATCACT TACTGTTCTT GTAGAGGGCA CGGGTTGCAG TTCCAGCACC
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39022466	mCV24981760	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29206580					SNP	A	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:98884644 () rs orientation: forward

Symbol	Name	Function Class
Rr403444	regulatory region 403444	1832 bp upstream
Rr470976	regulatory region 470976	1699 bp proximal