rs29200123 SNP Detail

Summary

• ID
  rs29200123
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:31612221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATAAAAAA CAGACTCTCT
  GACTTTGACT ACCCTTTAAA GAGTGGGCCA GCTAGATGGT TCACTGGGTT AAAGGCACTT
  GCTGCTAAGC CCCACAACTT GAGTTTGATC CCTTGGGACC TAAAAGAAAG AACTGACCCC
  TACAAAGTAG CCTTATGATC TCCGTATGCC CCCACACAAA ATAAGCAAGT CAATGTAAAA
  R
  AATAAATGAA AAGATAAAAC ATAAAGCCGG AAAGACTGGG AGCTAAACAC AGCTGGTCTC
  CCATCTTGTT ACGTTGAACA CCTCTGATTA CTCACGCTAG CTTTCTAAAT CAAGTCTCAC
  CTATTTCACA TAGAAGTGAG TGTTTCTTAC TTACCAGAAT TTAATCACAT CAGTGGTTTT
  CCCCAAGGAA GTGAATGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
ss39019139	mCV24464348	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A	A
ss137568579	ENSMUSSNP2764763	ENSEMBL	ENSEMBL_Sanger	f	SNP			A		A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
rs29200123					SNP	G	G	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:31612221 () rs orientation: forward

Symbol	Name	Function Class
Gm48524	predicted gene, 48524	644 bp upstream
Rr464651	regulatory region 464651	1958 bp distal