rs29194246 SNP Detail

Summary

• ID
  rs29194246
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:54017159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTATATACA AAGCATTAAC
  TTGGATAGAG AACAAAGGAA AGAACATAGC CACGTGGACA GTCATGCAGA TAGCAGAGGA
  GATGCACACA TCAGAGCAAT GACTACAGGG ATGTTTGTGG GGTGAAGAAT GAAGGAGAAG
  AAGACGAGAA GACCTGGCTG GAGGCTCCCG TGTCCACCCT GTCATAGGTG AGGAAGCAAC
  R
  CCCCAATCCA CCTTTATGAA CGTGGCGCTG CACAACCACA CAGCACCGTG CCTGCCTCTC
  TGTGCTGGGA AGCAACTCCA TGAGGCCAAG GACACCTTCA ATGTTGTCCT TCTATAAATG
  ACAGAACCAC AGTTGGAGAA ATTAATGCTT TTTGCCTGAT CACTGGGCTT GTGATTTCAA
  CCTGTACTTC CAAGCCGTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39011422	mCV23216690	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss137763224	ENSMUSSNP5382032	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29194246					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:54017159 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	Intron