rs29180209 SNP Detail

Summary

• ID
  rs29180209
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:31614138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCTCCTG AGTGCTAGAA
  GTTAAGGTGT CTCCCACCAT GCCTGACTAA GAATGTTGTA TTTAAAAGAC ATCTTGATTC
  TGATTCTTCC TGGCTTTGCA GCCACGCTGT CCCCGTTTGA ACATGTTTGT AGTGTACCAT
  AGATAGCTTA CTTATTATTT TCACGTGGCT TTCACTTGAC TCATTTCTCT GAAGAGATCA
  Y
  ATAGGGAAAT CATGGTGATT CACAGGTACA CTGTAAGCAC TGCCCGCCTT TCAGACTGGC
  ACTGGTGAGC AACAGATAGC ACGAGGAAGC AATGACCAGG AAGTGCAAGT CTAATTCTGA
  GTTTCTGCTT TTTACTTCTT GTCATTTTCC CCAACAGATG CTAAATTCTG CCTTTTTTTT
  TTTTAATACA AGAAGAGAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38993992	mCV24464011	ABI	CRAMUS_MOUSE	f	SNP		C	C				T		T
ss50966253	NES14423304	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C		C	T	T	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29180209					SNP	C	C	C	C	C	C	T	C	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50966253	NES14423304	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:31614138 () rs orientation: forward

Symbol	Name	Function Class
Gm48524	predicted gene, 48524	914 bp downstream