rs29171829 SNP Detail

Summary

• ID
  rs29171829
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:31612319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAGTTTGA TCCCTTGGGA
  CCTAAAAGAA AGAACTGACC CCTACAAAGT AGCCTTATGA TCTCCGTATG CCCCCACACA
  AAATAAGCAA GTCAATGTAA AAAAATAAAT GAAAAGATAA AACATAAAGC CGGAAAGACT
  GGGAGCTAAA CACAGCTGGT CTCCCATCTT GTTACGTTGA ACACCTCTGA TTACTCACGC
  Y
  AGCTTTCTAA ATCAAGTCTC ACCTATTTCA CATAGAAGTG AGTGTTTCTT ACTTACCAGA
  ATTTAATCAC ATCAGTGGTT TTCCCCAAGG AAGTGAATGT GTCACTTCCA AATAGACATC
  AGAGGGCAAT GTTGCTACTG TGTGTGATAC TTCACAGTCA CCGCTGATTT AAGGGCCAGG
  CGAGGCAGAA CACTGCTGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38973263	mCV24464338	ABI	CRAMUS_MOUSE	f	SNP	C	C	T					T		T
ss50966267	NES14423320	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T		C	T	T	T	C		T	T	C	T
ss137568582	ENSMUSSNP4849963	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29171829					SNP	C	C	T	T	T	T	T	T	C	T	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50966267	NES14423320	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:31612319 () rs orientation: forward

Symbol	Name	Function Class
Gm48524	predicted gene, 48524	546 bp upstream