rs29171571 SNP Detail

Summary

• ID
  rs29171571
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:31612706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAACACTGC TGTCATCCCA
  AAGGCAGAGG CGGGAACAGA GTCAGAATTT CAAAGCCAGC CTGGCCTACA TAAAAAGTTC
  CAAGCCAACC AGGCCTGTAT AATGAGATCC TGAATCCAGT CTCAAAAACA AGCAAGCAAT
  CCAAAAAACA AAACAACAAA CCACTGTCAC TCAGACTTAC AGTGTGCGAG ACCATCCCGC
  K
  GTCAGGTCTA TATATCATTC ATTCAAGAGT TTATTAAGAA TTCATTTGTG CTCCCTTATC
  ACACCAAGGA CTAGGACCAT GGCTGTCCAC AGCCTGAGAT CTGCAAACTG TGTGCCCACA
  ATTGCCCACT TGGACTTTTG CGATGGGAGA TAACAGCAAT GGCATCCAAA TGGAGAGCTA
  TTGCACCTTG GTATTCTCAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	MSM/Ms
ss38975018	mCV24464047	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	G
ss137568603	ENSMUSSNP4768026	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	MSM/Ms
rs29171571					SNP	T	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:31612706 () rs orientation: forward

Symbol	Name	Function Class
Gm48524	predicted gene, 48524	159 bp upstream