rs29142442 SNP Detail

Summary

• ID
  rs29142442
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:31612924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATTCAAG AGTTTATTAA
  GAATTCATTT GTGCTCCCTT ATCACACCAA GGACTAGGAC CATGGCTGTC CACAGCCTGA
  GATCTGCAAA CTGTGTGCCC ACAATTGCCC ACTTGGACTT TTGCGATGGG AGATAACAGC
  AATGGCATCC AAATGGAGAG CTATTGCACC TTGGTATTCT CACCCAGAAT ATGCAAGATA
  Y
  TGGTGGCATT ACCATCCTGC ACTGGTTTGG ATGTGAAGCC ATCAGAGGCC TTTCTGTAGA
  AAGTCCAGGG ATTCTTATTT CACTTTCCCA TGACTCTCCC CTCATCCAGC TCTTGGCTGG
  AGCTCTTGTG TTTATGAGGT TGAGTGTTCT TCAACCTTCC AAGCTCAGCA CTTGGCCTGA
  CAGGAATCTC CCTGGGCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38916835	mCV24464038	ABI	CRAMUS_MOUSE	f	SNP		C	T					T
ss50966261	NES14423314	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T		C	T	T	T	T	T	C	T
ss137568612	ENSMUSSNP2207494	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29142442					SNP	C	C	T	T	T	T	T	T	C	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50966261	NES14423314	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:31612924 () rs orientation: forward

Symbol	Name	Function Class
Gm48524	predicted gene, 48524	within coordinates