rs29086192 SNP Detail

Summary

• ID
  rs29086192
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:94254841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTTAGTG CTCAGATGTC
  CATGGCACAG AAAAATGTGG CTGCTTCCTG TGTCTGTGCA CAGCCTGGCA GGGTGGAGGT
  GCTGGGCTCG AGCCAGGCTG CCTGGAGTCA AGGGTCAAGG TGGGCTGGAA GCTGGCCAAT
  GGCTCCAGTT ACTTCAAGGA CTCAAACTAG GTGCAGACTT GGGAGAAGAC AGTGTCCACC
  R
  TACCTTTGGT GAACAAGGTA CCTTTGGTAC CTTGCCCACA ATGTCACACT TGTCATAGAA
  GGAAGTGGCA GGTTCTCTGG CATTGTAGTA AGTCTCTAGC TTCTTCTTGA TGGTCTCCTC
  ATTGTCATCC ACACAGCCAC TCTCCCCTCA CTTTAGGAGT CAATGGGTCA TGGTCTCGGG
  ACCTGTGTCT ACATACAATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38416144	NES09667775	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29086192					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38416144	NES09667775	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:94254841 () rs orientation: forward

Symbol	Name	Function Class
Gm6092	predicted gene 6092	within coordinates
Gm61740	predicted gene, 61740	within coordinates
Tssr163800	transcription start site region 163800	553 bp downstream