rs29062154 SNP Detail

Summary

• ID
  rs29062154
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:55831424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTGGGTTT TCAAATGAGG
  TCTTAGAAAG AAAGCCCATC TTTGTTGATG TACACAACCA TTGTACAATT TCCACATGGC
  AGAAGAAAAC AAATGGGAGA GACCAGTTCA AACAGATGGA AAGGGGTTTC CCACAGGCAG
  TCATGGCCAC GGGTACTTGT GCCTGTAAGC CACAAGAAGT TGGAACAGAT GCCTCAAAGT
  W
  ACTTGGTAAC TCAAGAAAAT CGACTGGGCT TCCTTGTGTG TGTGTAGTTT GTGTTTACCT
  CTATACACAA GGGAACATGG CTGGGGATTT TAGAGAAAAG CCCAAGCAAG AGCGATTCTC
  TCATTTTCCC TATTGACTTG ACAGCGATAC AACTGTGCCA AGCAAAGGTC GTTATACAAA
  AATGTCCCTC ATTTACTTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38389177	NES09711738	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29062154					SNP	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38389177	NES09711738	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:55831424 () rs orientation: forward

Symbol	Name	Function Class
Fhl1	four and a half LIM domains 1	Intron
Rr691467	regulatory region 691467	105 bp proximal
Tssr161005	transcription start site region 161005	471 bp upstream
Tssr161006	transcription start site region 161006	981 bp upstream
Tssr161007	transcription start site region 161007	1637 bp upstream
Tssr161008	transcription start site region 161008	1737 bp upstream
Tssr161009	transcription start site region 161009	1810 bp upstream