rs29061979 SNP Detail

Summary

• ID
  rs29061979
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:55832425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGGGAGT CTGTAGGCTT
  GTTACTTACA GCTGTCTGGG GCCACAGCTG GGATGCTGGT GGGGAGCGAA AGGAGTTTGA
  TCATATGAGG GAGGAGGAGG TTCTTGGAAT GGCGACTTTA GCCCTTTGCA AAAGTCAGTT
  TTCCAGATTA TACTTAAAAC TTTTTTTTTT TTTTTTTTTT TTTGCTGTTT AGAGCAGCAG
  R
  TATGACAAAA GGTAATACTT GCATAGCTAG GCCAGCCCTC ACTGTCTGGA TCTGAGAGAG
  ATTTGATTTT GATGTGTCAC AAAACTCTAC TTCACTGTGA CAAATCCTTC ATAATTGCAG
  AATGAGCCTG TTGGCCAAAC TTCAGCCACC AAGAAAATAT CTGGGACAAA ACTGTCTGGG
  CTCTTTCCAA GGACTGAAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38389172	NES09711743	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29061979					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38389172	NES09711743	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:55832425 () rs orientation: forward

Symbol	Name	Function Class
Fhl1	four and a half LIM domains 1	Intron
Rr691467	regulatory region 691467	129 bp distal
Tssr161005	transcription start site region 161005	501 bp downstream
Tssr161006	transcription start site region 161006	16 bp downstream
Tssr161007	transcription start site region 161007	636 bp upstream
Tssr161008	transcription start site region 161008	736 bp upstream
Tssr161009	transcription start site region 161009	809 bp upstream