rs29061862 SNP Detail

Summary

• ID
  rs29061862
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:55833340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAGAGGCC TTTTCTTCCT
  GGGAGCCATA GTGAAGTATC TGTTGCTGTG ACACTTGGTA ATTAGCCAGG CTTAAATGGA
  AGCTGGACCC TGAGGACTCA GGGTTTTCCT AGCTACTTGA CAACAGTGCC CTGGGACCTC
  CAGGGCTGTC TATGGCAGAG TGTCCTTGTG TTTCCCTTAC TCATTTGTCC TGCTTGCTTG
  Y
  CCCTACAGGT CCCTCCAGCT ATAAGGTGGG CACCATGTCG GAGAAGTTCG ACTGTCACTA
  CTGCAGGGAC CCCTTGCAGG GGAAGAAGTA CGTGCAGAAG GATGGCCGTC ACTGCTGCCT
  GAAGTGCTTT GACAAGTTCT GCGCCAACAC CTGCGTGGAC TGCCGCAAGC CCATAAGCGC
  TGATGCCAAG GTAACTGTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38389165	NES09711750	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29061862					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38389165	NES09711750	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:55833340 () rs orientation: forward

Symbol	Name	Function Class
Fhl1	four and a half LIM domains 1	Intron
Rr691467	regulatory region 691467	1044 bp distal
Tssr161005	transcription start site region 161005	1416 bp downstream
Tssr161006	transcription start site region 161006	931 bp downstream
Tssr161007	transcription start site region 161007	265 bp downstream
Tssr161008	transcription start site region 161008	168 bp downstream
Tssr161009	transcription start site region 161009	97 bp downstream