rs29061859 SNP Detail

Summary

• ID
  rs29061859
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:55833973 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCAATAGA AGTGTTTAAT
  TTTGGATTTC TTATTTTATA ATACTTCTAC ATATTTAATG AAGGGTACTA AAATGATACT
  CAAGTCTAAA CACAAAATTC ATTTACATTT CATATATACA TAGCCTGAAG GTGATTTTAT
  ATAGAGTTTT TGTCTTTCAA ATTAAATATA ATTCTATCAT TTTTCCCCTT TCCCTTTTTT
  Y
  CCTCCATCCT AATTTGGGCA TCCTCCAGTT CCCGCATGCT TTCTCTCAAG TTCACAGCCT
  CTGGCCTCCT TTCCCTTTAC TGTCTGTGGA ATGTCATTTC TGTGCTCTAG CTGACGGGAC
  TGGAAGGGTC TTACTTTTCC CAGGGACACA GAATAAACTG TGTGTTGTGC TTTGACACTG
  TGACCGTGAC CTGGCCCACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38389162	NES09711753	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29061859					SNP	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38389162	NES09711753	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:55833973 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fhl1	four and a half LIM domains 1			Intron
				Noncoding-Transcript-Variant
Rr691467	regulatory region 691467			1677 bp distal
Tssr161006	transcription start site region 161006			1564 bp downstream
Tssr161007	transcription start site region 161007			898 bp downstream
Tssr161008	transcription start site region 161008			801 bp downstream
Tssr161009	transcription start site region 161009			730 bp downstream