rs29061858 SNP Detail

Summary

• ID
  rs29061858
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:55834067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTCATTT ACATTTCATA
  TATACATAGC CTGAAGGTGA TTTTATATAG AGTTTTTGTC TTTCAAATTA AATATAATTC
  TATCATTTTT CCCCTTTCCC TTTTTTTCCT CCATCCTAAT TTGGGCATCC TCCAGTTCCC
  GCATGCTTTC TCTCAAGTTC ACAGCCTCTG GCCTCCTTTC CCTTTACTGT CTGTGGAATG
  K
  CATTTCTGTG CTCTAGCTGA CGGGACTGGA AGGGTCTTAC TTTTCCCAGG GACACAGAAT
  AAACTGTGTG TTGTGCTTTG ACACTGTGAC CGTGACCTGG CCCACGAGAT CAGATGTGTC
  CTTTTCTCCT TGTGAGATCT GTCTGTTAAC CCGTTTACGC TTGAGATTCC GGAGCCTTTT
  GGATTTCAGG CTTGGGCTGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38389161	NES09711754	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29061858					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38389161	NES09711754	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:55834067 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fhl1	four and a half LIM domains 1			Intron
				Noncoding-Transcript-Variant
Rr691467	regulatory region 691467			1771 bp distal
Tssr161006	transcription start site region 161006			1658 bp downstream
Tssr161007	transcription start site region 161007			992 bp downstream
Tssr161008	transcription start site region 161008			895 bp downstream
Tssr161009	transcription start site region 161009			824 bp downstream