rs29061855 SNP Detail

Summary

• ID
  rs29061855
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:55834430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGATTCCGG AGCCTTTTGG
  ATTTCAGGCT TGGGCTGGGG GCTCTCCCCC CTCCTCTTAT GTACTTTGGG AACTGTGAGG
  CTTTCGTCTT CACTCCAGTG CTACTCTTCC TGTTACTCCT AAAAGCACTC AGCACAGGGC
  ATCCCCACAT GGAGGGGGCT GACATTGGCG TGAGTAGTTA CCTGGCCCTG GAGAACCTGG
  Y
  CTCTGATGGT AAGGCTACTG CCACTGGCCC CAGTGCCCCT CACAGTGGCC ACCCTGCTCT
  GCTTGATGTC CAGGAGGTGC ATTATAAGAA TCGCTACTGG CACGACAACT GCTTCCGCTG
  TGCCAAGTGC CTTCACCCCT TGGCCAGTGA GACCTTTGTG TCCAAGGATG GCAAGATCCT
  GTGCAACAAG TGCGCTACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38389158	NES09711757	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29061855					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38389158	NES09711757	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:55834430 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fhl1	four and a half LIM domains 1			Intron
				Noncoding-Transcript-Variant
Tssr161007	transcription start site region 161007			1355 bp downstream
Tssr161008	transcription start site region 161008			1258 bp downstream
Tssr161009	transcription start site region 161009			1187 bp downstream