rs28337984 SNP Detail

Summary

• ID
  rs28337984
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:89226946 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGTCTCTG GACCTTGATC
  ACTCAAGCAA TGTCAGCTCC ATCTTGTGGA GTGGGCCTTA AGTCAGGCAT TATTGGTTGG
  TTACTCTCAT AGTTTGTGCC AACCTTGCCT TGTCTTGCAG GCAGAACACC AGAAACCAGG
  CTTTATATAT AAAGTTTCAT ATTGTTTCCC TCTAACCCTC CAGGTCTGGC CAACCATACT
  Y
  ACTGGTTAGT TTGACACACT AATTTGGGAA GAGGAACCTC AGCTGAAAAA AGCCTCCACC
  AGATTGGTCT GTGGGACATT TTCTTGGTTA ATGACAAATG TGTATGTGTG GGGGTTCCAG
  TCCACTCTGG GTGTATGTCC CACATGTCCT GGAAGAAAGA TGGTTGACTT TGAGCCTTGA
  GCAAGCCAGT AAGCAGTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38236237	NES09582651	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28337984					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38236237	NES09582651	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:89226946 () rs orientation: forward

Symbol	Name	Function Class
Cdkn2b	cyclin dependent kinase inhibitor 2B	Intron
Cpgi14440	CpG island 14440	1307 bp distal
Cpgi14441	CpG island 14441	1710 bp proximal
Gm12610	predicted gene 12610	within coordinates
Rr376809	regulatory region 376809	within coordinates
Rr595183	regulatory region 595183	1917 bp proximal