rs28337983 SNP Detail

Summary

• ID
  rs28337983
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:89227402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAATG TCTGTGCTCA CACACTGTAT
  R
  TAGTCTGATC ATTTGTGCAT AGGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38236236	NES09582571	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	A	G	G	A	G	G		A	G		G
ss146947736	ENSMUSSNP3825263	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A
ss321204799	CHEV_4_88955074	CHEVERUD	SCREENING_POP	f	SNP											A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs28337983					SNP	A	A	G	G	A	G	G	A	G	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38236236	NES09582571	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:89227402 () rs orientation: forward

Symbol	Name	Function Class
Cdkn2b	cyclin dependent kinase inhibitor 2B	Intron
Cpgi14440	CpG island 14440	1763 bp distal
Cpgi14441	CpG island 14441	1254 bp proximal
Gm12610	predicted gene 12610	within coordinates
Rr376809	regulatory region 376809	68 bp downstream
Rr398336	regulatory region 398336	1788 bp upstream
Rr595183	regulatory region 595183	1461 bp proximal
Rr595184	regulatory region 595184	1864 bp proximal
Tssr42412	transcription start site region 42412	1794 bp downstream
Tssr42413	transcription start site region 42413	1856 bp downstream