rs28337978 SNP Detail

Summary

• ID
  rs28337978
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:89228158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGGTACCTT TCCTAAACCA TACTATTAAC AGGAGTGCTG
  ATTTTCATAG TCCCAGAGAT GGACAGTGAG GTGAGTGAAA ACGGCGACTA TATTAATCAT
  M
  AGGAGAGCAC AAAAGCATTA GTAAACACTG AACAAATGTA TCTCAATTTG TCCCTAAATG
  AATGTTTAGG GAACCTCTTT GTCGTCCCGA AAGAAAGGA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss38236231	NES09582583	PERLEGEN	MM_PANEL2	f	SNP	A		C	A	C	A	C		C	A	C		C		C
ss45603714	mCV23376976	ABI	CRAMUS_MOUSE	f	SNP		A						C		A
ss146947771	ENSMUSSNP3489389	ENSEMBL	ENSEMBL_Sanger	f	SNP		A								A
ss321204805	CHEV_4_88955830	CHEVERUD	SCREENING_POP	f	SNP												A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs28337978					SNP	A	A	C	A	C	A	C	C	C	A	C	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38236231	NES09582583	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:89228158 () rs orientation: forward

Symbol	Name	Function Class
Cdkn2b	cyclin dependent kinase inhibitor 2B	Intron
Cpgi14441	CpG island 14441	498 bp proximal
Gm12610	predicted gene 12610	within coordinates
Rr376809	regulatory region 376809	824 bp downstream
Rr398336	regulatory region 398336	1032 bp upstream
Rr595183	regulatory region 595183	705 bp proximal
Rr595184	regulatory region 595184	1108 bp proximal
Rr595185	regulatory region 595185	1253 bp proximal
Rr595186	regulatory region 595186	1323 bp proximal
Tssr42412	transcription start site region 42412	1038 bp downstream
Tssr42413	transcription start site region 42413	1100 bp downstream