rs28337977 SNP Detail

Summary

• ID
  rs28337977
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:89228176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATACTATTA ACAGGAGTGC TGATTTTCAT AGTCCCAGAG
  ATGGACAGTG AGGTGAGTGA AAACGGCGAC TATATTAATC ATCAGGAGAG CACAAAAGCA
  Y
  TAGTAAACAC TGAACAAATG TATCTCAATT TGTCCCTAAA TGAATGTTTA GGGAACCTCT
  TTGTCGTCCC GAAAGAAAGG ACCCAAGTGT TCTGTTGGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38236230	NES09582585	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	C	T		T	C	T	T		C	T		T
ss45650104	mCV23376975	ABI	CRAMUS_MOUSE	f	SNP		C						T		C
ss146947775	ENSMUSSNP3052202	ENSEMBL	ENSEMBL_Sanger	f	SNP		C								C
ss321204806	CHEV_4_88955848	CHEVERUD	SCREENING_POP	f	SNP													C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs28337977					SNP	C	C	T	C	T	C	T	T	T	C	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38236230	NES09582585	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:89228176 () rs orientation: forward

Symbol	Name	Function Class
Cdkn2b	cyclin dependent kinase inhibitor 2B	Intron
Cpgi14441	CpG island 14441	480 bp proximal
Gm12610	predicted gene 12610	within coordinates
Rr376809	regulatory region 376809	842 bp downstream
Rr398336	regulatory region 398336	1014 bp upstream
Rr595183	regulatory region 595183	687 bp proximal
Rr595184	regulatory region 595184	1090 bp proximal
Rr595185	regulatory region 595185	1235 bp proximal
Rr595186	regulatory region 595186	1305 bp proximal
Tssr42412	transcription start site region 42412	1020 bp downstream
Tssr42413	transcription start site region 42413	1082 bp downstream