rs28337974 SNP Detail

Summary

• ID
  rs28337974
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:89228668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCATGTAA CCGGTAATCT
  CATCGTTATC GTGTCCTTCT CTCTATCTGA CCCTCCCTTT TACAATTTGC TCTCTGAGTG
  TTGGCTTCTT TCTATGACTG TAAGATGGCA GAATAAATAC TGGTATATTT TTCCACCTTT
  GCAGCAAAGA TTCGGGGGCT GGAGACATTG CTCCCAGATA GCGCACTTGC CCAGCTTGTA
  Y
  GGAACCAGAC CCAGCGTCGC AAAAGGAAGA AAAAAAAAAC CAATCTAGTG CCGAGGGATG
  TTTCGATCGT TTTTGTTTTT CAGGATTTTT GCTCTTGCAA AACCTGCCTC CCGTCGGGCC
  CGCACACAGC CAGCACCAGA GGGCTGCCCA GGTGGTGCCC AGTTACAACT CACAGCCGCG
  GAGGGCACCG CGCTCGTGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38236227	NES09582590	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28337974					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38236227	NES09582590	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:89228668 () rs orientation: forward

Symbol	Name	Function Class
Cdkn2b	cyclin dependent kinase inhibitor 2B	Intron
Cpgi14441	CpG island 14441	within coordinates
Gm12610	predicted gene 12610	within coordinates
Rr376809	regulatory region 376809	1334 bp downstream
Rr398336	regulatory region 398336	522 bp upstream
Rr595183	regulatory region 595183	195 bp proximal
Rr595184	regulatory region 595184	598 bp proximal
Rr595185	regulatory region 595185	743 bp proximal
Rr595186	regulatory region 595186	813 bp proximal
Tssr42412	transcription start site region 42412	528 bp downstream
Tssr42413	transcription start site region 42413	590 bp downstream