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rs28337971 SNP Detail
Summary
  • ID
    rs28337971
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr4:89229036 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ACTCACAGCC GCGGAGGGCA
    CCGCGCTCGT GCGCCCTCTG CCGGTAAGGC CTGGGGACCC TCGCTACCTG GATTGGGCGC
    CTCCCGAAGC GGTTCAGGGC GTTGGGATCT GCGCCGGCTT CCAGGAGCTG CCGCACCGTC
    TCCACTTGCC CCCGCGCCGC GGCGGTGGCC AGGCCCGCGT CACTGCTGCC GCCCAACATG
    Y
    CCTTGTCCCC GGTCTGTGGC AGAAATGGTC CTTCGCCGGC CGTGAGATTG CTACAGCCTG
    GTCTCTGAGC GGCTCCTCCC CTCTGGAGAC CCAGTAGCTT CGGTGAGCGT CCTGGGAACG
    CTCGAGCGCT AGCGCCTGGG AACCGCACCG CCGGCACAGA CGACTCACGC CGGGTAGGGA
    GCCCGCAGGC ACTGAGCTGC                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
ss38236224 NES09582593 PERLEGEN MM_PANEL2 f SNP C C C C C C C C C C C C T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
rs28337971 SNP C C C C C C C C C C C C T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss38236224 NES09582593 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:89229036 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cdkn2b cyclin dependent kinase inhibitor 2B mRNA-UTR
Cpgi14441 CpG island 14441 within coordinates
Gm12610 predicted gene 12610 within coordinates
Rr376809 regulatory region 376809 1702 bp downstream
Rr398336 regulatory region 398336 154 bp upstream
Rr595183 regulatory region 595183 152 bp distal
Rr595184 regulatory region 595184 230 bp proximal
Rr595185 regulatory region 595185 375 bp proximal
Rr595186 regulatory region 595186 445 bp proximal
Tssr42412 transcription start site region 42412 160 bp downstream
Tssr42413 transcription start site region 42413 222 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory